Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0784
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...    96   1e-20
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...    95   2e-20
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...    95   2e-20
At1g31000.1 68414.m03796 F-box family protein contains F-box dom...    31   0.57 
At3g43290.1 68416.m04569 hypothetical protein glyceraldehyde-3-p...    27   7.0  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   7.0  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 182 DVQVSDMSLQDYISVK-EKYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGK 358
           DV V+D+SL DYI V+  K+     ++AG Y+ KRFRKAQCPIV RLTNSLMMHG N GK
Sbjct: 29  DVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGK 88

Query: 359 XLMAVXXVKHAFEMYSLXNWRKP 427
            LMAV  VKHA E+  L +   P
Sbjct: 89  KLMAVRIVKHAMEIIHLLSDLNP 111



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 393 LKCIHLXTGENPXXVLVTAIINSGPREDS 479
           ++ IHL +  NP  V++ AI+NSGPRED+
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDA 128


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 182 DVQVSDMSLQDYISVKE-KYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGK 358
           DV V+D+SL DYI V+  K+     ++AG Y+ KRFRKAQCPIV RLTNSLMMHG N GK
Sbjct: 29  DVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGK 88

Query: 359 XLMAVXXVKHAFEMYSLXNWRKP 427
            LMAV  VKHA E+  L +   P
Sbjct: 89  KLMAVRIVKHAMEIIHLLSDLNP 111



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 393 LKCIHLXTGENPXXVLVTAIINSGPREDS 479
           ++ IHL +  NP  V++ AI+NSGPRED+
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDA 128


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 182 DVQVSDMSLQDYISVKE-KYXXIFTYSAGXYAHKRFRKAQCPIVXRLTNSLMMHGXNTGK 358
           DV V+D+SL DYI V+  K+     ++AG Y+ KRFRKAQCPIV RLTNSLMMHG N GK
Sbjct: 29  DVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGK 88

Query: 359 XLMAVXXVKHAFEMYSLXNWRKP 427
            LMAV  VKHA E+  L +   P
Sbjct: 89  KLMAVRIVKHAMEIIHLLSDLNP 111



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +3

Query: 393 LKCIHLXTGENPXXVLVTAIINSGPREDS 479
           ++ IHL +  NP  V++ AI+NSGPRED+
Sbjct: 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDA 128


>At1g31000.1 68414.m03796 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 363

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +2

Query: 77  MTTXPRQAAWLWKPCLYHKPPTFLKSSFSADGVATDVQVSDMS--LQDYISVKEKYXXIF 250
           + T PR    ++ P +  +    ++S F  D V    +V  MS  + DY++V      +F
Sbjct: 104 LITNPRTGKSIYLPKVKSRSK-IIQSFFGYDPVYGQYKVLCMSERMNDYLNVPSSEHQVF 162

Query: 251 TYSAGXYAHKRFRKAQCPIVXR-LTNSLMMHG 343
           T        + +R  +C I  R  TNS+ M G
Sbjct: 163 TLGGVQKVEQSWRMIECNIHHRPKTNSVCMDG 194


>At3g43290.1 68416.m04569 hypothetical protein
           glyceraldehyde-3-phosphate dehydrogenase, Equus
           caballus, EMBL:AF097179
          Length = 137

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 149 KSSFSAD-GVATDVQVSDMSLQDYISVKEK 235
           KS+   D G +TD++ +D+S++DY  V EK
Sbjct: 27  KSTTDGDAGASTDLEPNDVSVKDYSGVWEK 56


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 101 AWLWKPCLYHKPPTFLKSSFSA 166
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,980,520
Number of Sequences: 28952
Number of extensions: 189600
Number of successful extensions: 313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)