Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0782
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   0.65 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.86 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   2.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 6   RGLAHRQANPPPASRT 53
           RGL HRQ N PP+  T
Sbjct: 631 RGLLHRQFNLPPSKDT 646



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -1

Query: 501 ACQVTTKSSTNVI--SCEC 451
           ACQV T ++TN +   C+C
Sbjct: 136 ACQVCTPNATNTVWSHCQC 154


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 6   RGLAHRQANPPPASRT 53
           +GL HRQ N PPA  T
Sbjct: 631 QGLLHRQFNLPPAKDT 646



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -1

Query: 501 ACQVTTKSSTNVI--SCEC 451
           ACQV T ++TN +   C+C
Sbjct: 136 ACQVCTPNATNTVWSHCQC 154


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 277 QPITSIFACRIHEGAS 324
           Q I +  +CR H+GAS
Sbjct: 77  QNILTFLSCRFHQGAS 92


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -2

Query: 188 ETTPAVAIEASICLLGTLRYLCTCVSLLTNS 96
           + T    +    C+ G   Y+CTC    T S
Sbjct: 26  DCTETSCMNGGTCIDGINSYICTCKPGFTGS 56


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 104  TNSVSVAASWAPSTTVS 54
            T SVS   SW P +T +
Sbjct: 1349 TTSVSTTTSWNPGSTTN 1365


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 301 CRIHEGASRLYSSF 342
           C IH+ +S +YS F
Sbjct: 274 CTIHQPSSEVYSMF 287


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 301 CRIHEGASRLYSSF 342
           C IH+ +S +YS F
Sbjct: 274 CTIHQPSSEVYSMF 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,904
Number of Sequences: 336
Number of extensions: 2399
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)