Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0782
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   1.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   2.1  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   2.8  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.8  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    26   4.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.4  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 467 SYLANVNRIVFFFFLKVSSNVYGSTLPRFGPAFVPFTFQNSLNELYKRE 321
           ++L +V+RIV++ F K S++   S L     +     + N+   LY+ E
Sbjct: 418 TWLRHVSRIVYYMFSKTSASYVTSPLTLAYASIYSVPYMNASKALYQIE 466


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 191 SETTPAVAIEASICLLGTLRYLCTCVSLLTNSVSVAASWAPSTT 60
           SETT   +  +S+  +G   +  + +SLLT S S   S + S+T
Sbjct: 315 SETTNLPSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSST 358


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 443 IVFFFFLKVSSNVYGSTLPRFGPAFVPFTFQNSLNELYKRE 321
           ++FF F+K+ S++  +        FV  TF N  N+L KR+
Sbjct: 6   LIFFSFIKLVSSLQYTGNGVLALDFVAKTFPNQENQLEKRD 46


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 128 LCTCVSLLTNSVSVAASWAPSTTVSSSACWRRVCLTM 18
           LC    LL  S+ V      +T++   AC+ R+C+T+
Sbjct: 11  LCIEEDLLPKSLDVLEYLLSTTSIPIPACYIRMCITL 47


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 291 DFRVSHTRGSLAFV*FI*TILESEWNERGTESWKC 395
           +  VS + GS+  +     +++++W E   E+W C
Sbjct: 113 ELAVSMSNGSVLIIDIDSGVIKNKWKEHDYEAWTC 147


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 158  SICLLGTLRYLCTCVSLLTNSVSVAASWAPSTTV 57
            SI LL +L+YL  C+ +  +S  ++  W   T V
Sbjct: 1008 SIFLLSSLQYLGICIGINQSSEFLSPIWKKKTYV 1041


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,652
Number of Sequences: 5004
Number of extensions: 40149
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)