Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0782
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1126 + 26331879-26332013,26332132-26332476                       28   6.5  
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    27   8.7  

>12_02_1126 + 26331879-26332013,26332132-26332476
          Length = 159

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 3  ARGLAHRQANPPPASRTTH 59
          A G A RQA PPPA+  TH
Sbjct: 26 AGGRAQRQAAPPPATTITH 44


>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 164 EASICLLGTLRYLCT--CVSLLTNSVSVAASWAPSTTVSSSACWRRV 30
           E ++ L+G L  L T  CV+     V +   WA + T +  A W R+
Sbjct: 86  EWALLLVGCLLGLATGICVAAFNRGVHIIHEWAWAGTPTEGAAWLRL 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,653
Number of Sequences: 37544
Number of extensions: 266107
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)