Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0782
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26697| Best HMM Match : EGF (HMM E-Value=7.5e-34)                   29   3.8  
SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_20209| Best HMM Match : RnaseH (HMM E-Value=1.5)                    28   6.7  
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)              27   8.8  

>SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = -2

Query: 350 NSLNELYKREAPSCMRHAKIDVIG*QYCNSSTRPKGGDISELFDVTFLVRLVFSETTPAV 171
           N L E      P  +     + +G          K  +I++   V  LVRL+   +TP  
Sbjct: 404 NMLIEFLSENLPQSLHFIGSEALG--VLAEGVHNKRNEIAQANGVMPLVRLLAKASTPGY 461

Query: 170 AIEASICLLGTLRYLCTCV 114
            I   + +L TLR LC CV
Sbjct: 462 II---LSVLRTLRALCICV 477


>SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 269 CNSSTRP-KGGDISE-LFDVTFLVRLVFSETTPAVAIEASICL 147
           C S+ +P K  D+   L DV++L+ +  S++TPA      ICL
Sbjct: 134 CRSADQPAKMADLEAVLADVSYLMAMEKSKSTPAARASKKICL 176


>SB_26697| Best HMM Match : EGF (HMM E-Value=7.5e-34)
          Length = 684

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 183 CLAEHQPNKECYIKQLGNVAPLRTRGTVTVLSADNIDFRVS 305
           C   H  N   Y K++    PLRT   + +L+ADN D   S
Sbjct: 327 CKERHHENMIAYSKEVE--VPLRTSKKIVLLAADNYDTEFS 365


>SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 171 YCWRCLAEHQPNKECYIKQLGNVAPLRTRGTVTVLSADNIDFRVSHTRGSL 323
           YCWR        K+ ++ +   +AP  TR    VL AD ++  V H + ++
Sbjct: 505 YCWRAKEIRDAAKKIFLTREHGLAPGDTRELGHVLGADQLNM-VCHEKDNI 554


>SB_20209| Best HMM Match : RnaseH (HMM E-Value=1.5)
          Length = 212

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 16  LIVKQTRRQQAELLTVVLGAQLAATDTEFVSSETHV 123
           ++ KQ    + ELLTVVL  +L AT T+ ++ E  V
Sbjct: 86  VLSKQLHINELELLTVVLAVRLWATKTQGLTIELFV 121


>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
          Length = 376

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 483 KSSTNVISCECK*DSFFFFFEGIVKC 406
           +S  N  +C+C+  +  FF  G++KC
Sbjct: 340 QSGKNYFNCKCRGQASHFFCSGLMKC 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,767
Number of Sequences: 59808
Number of extensions: 323495
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)