Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0782
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22600.1 68415.m02679 KH domain-containing protein                  28   4.1  
At1g33100.1 68414.m04087 MATE efflux family protein similar to r...    27   9.6  

>At2g22600.1 68415.m02679 KH domain-containing protein 
          Length = 632

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 240 APLRTRG--TVTVLSADNIDFRVSHTRGSLAFV 332
           APL+  G   VTV + +N++ R SH + +LA V
Sbjct: 314 APLKVSGERVVTVSARENLESRYSHAQNALALV 346


>At1g33100.1 68414.m04087 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 475

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -2

Query: 260 STRPKGGDISELFDV-TFLVRLVFSETTPAVAIE-ASICLLGTLRYLCTCVSLLTNSVSV 87
           S  PKG   + L  V T  +  +F+ T+ AVA E A +  L     L   V  + + V++
Sbjct: 326 SGNPKGAKFATLIAVFTGRISYIFT-TSEAVAAEVADLSPLLAFSILLNSVQPVLSGVAI 384

Query: 86  AASWAPSTTVSSSACW 39
            A W       + AC+
Sbjct: 385 GAGWQGYVAYVNLACY 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,627
Number of Sequences: 28952
Number of extensions: 212830
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)