Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0779
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 373 TYVCVCMPEFT 405
           +Y+C C P FT
Sbjct: 44  SYICTCKPGFT 54


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -1

Query: 380 TYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDHDNNL 258
           T + K    H  +    +C N     + ++  TYN+  N L
Sbjct: 318 TNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKL 358


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -1

Query: 380 TYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDHDNNL 258
           T + K    H  +    +C N     + ++  TYN+  N L
Sbjct: 210 TNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKL 250


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 373 TYVCVCMPEFTCXVAL 420
           TY+C    +F+C V +
Sbjct: 142 TYICYAFGKFSCKVMI 157


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 373 TYVCVCMPEFTCXVAL 420
           TY+C    +F+C V +
Sbjct: 375 TYICYAFGKFSCKVMI 390


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 373 TYVCVCMPEFTCXVAL 420
           TY+C    +F+C V +
Sbjct: 375 TYICYAFGKFSCKVMI 390


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,776
Number of Sequences: 336
Number of extensions: 2163
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)