Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0779
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    30   0.27 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.7  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.5  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      25   10.0 

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 332 LICSNSKPLHSQFNIITYNDHDNNLQSVTYELHT 231
           +IC  SKP  S F+II     DN  +SV   LHT
Sbjct: 239 IICRGSKP-SSIFDIIRQESSDNKNESVELPLHT 271


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 374  VMKHTSIHFSRTTGLICSNS 315
            +M +  +HF  T GL+C NS
Sbjct: 1799 LMFNELLHFKETVGLLCKNS 1818


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 362 TSIHFSRTTGLICSNSKPLHSQ-FNIITYNDHDNNLQSVTY 243
           +SIH +R + L  S S PL+   +NI T N  D N++ V Y
Sbjct: 17  SSIHPNRDSYLD-SQSDPLNQNLYNIETENVKDLNIEDVDY 56


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 411 TTSKFRHTHTHVRNETHIHSF 349
           T S  ++ H+HV ++T  HSF
Sbjct: 329 TLSNVKNNHSHVGSQTKSHSF 349


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 275 DHDNNLQSVTYELHTTTFSSPGANLIQFMTL 183
           D  +NLQ ++  +H    S+P  NLI F  L
Sbjct: 16  DVKHNLQKMSSYVHEVMESNPSTNLILFPEL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,257
Number of Sequences: 5004
Number of extensions: 35525
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)