Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0779
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    30   1.1  
07_01_0052 - 411927-412589                                             27   7.7  
01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537...    27   7.7  

>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 5   HRVQSLGEEHLLRPLRETRLSPLRADGGPRLS 100
           H V+ +G EHLLR +++T +S L  +   +L+
Sbjct: 157 HEVEEIGVEHLLRDVKDTTISTLATEVTSKLA 188


>07_01_0052 - 411927-412589
          Length = 220

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 11  VQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLAGHVAH*VTPWPYLAESL 163
           V  LG +H+ +PLRE  LS +   G  R++T   G+V      W + A+++
Sbjct: 142 VTILGRDHITQPLRE--LSVVGGTGAFRMAT---GYVLWRTASWQFRADAV 187


>01_05_0512 -
           22852009-22852140,22852686-22852820,22853739-22853787,
           22854043-22854128,22854211-22854291,22854394-22854496,
           22854577-22854684,22854799-22854919,22855532-22855712
          Length = 331

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 398 SGIHTHTYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDH-DNNLQSVTYELH 234
           S +HT T V K T         ++C  ++PL +    ITY    DN +  VT  LH
Sbjct: 63  SPLHTTTIVEKCTLKLVDEYKHMMCQATEPLSTFLQYITYGHMIDNVVLIVTGTLH 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,119
Number of Sequences: 37544
Number of extensions: 227419
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)