Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0779
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              30   1.1  
SB_26788| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)                   30   1.5  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   29   2.6  
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = -1

Query: 422 TKATXQVNSGIHTHTYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDHDNNLQSVTY 243
           T    Q N+   +H Y  K T+ HF   + L   N      Q   IT     +N  + ++
Sbjct: 699 TPPKPQHNTSTTSHHYTTKTTTQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHNTSTTSH 758

Query: 242 ELHTTTFSSPGANLIQ--FMTLTLNDLSKVT 156
             H TT ++  + L+Q  F  + L DL++ T
Sbjct: 759 --HNTTKTTTQSTLLQPVFQLIELLDLNRTT 787


>SB_26788| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
          Length = 335

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -1

Query: 290 IITYNDHDNNLQSVTYELHTTTFSSPGANLIQFMTLTLNDLSKVTRL 150
           ++ Y D +  LQ ++Y + +   S   +++  + +L L D++KVT +
Sbjct: 287 VVYYRDDEGELQHLSYAVVSDELSHDKSSVYAYNSLILEDVNKVTEV 333


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 82  WWTALKHTACWPRSS-LSDPVAIPSRVTLLRSFSVKVIN 195
           W T  ++   WP  S  + P + PSRVT+L   ++ +IN
Sbjct: 654 WSTPSRYNTPWPTPSRYNTPWSTPSRVTVLDVCAIHIIN 692


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -1

Query: 320  NSKPLHSQFNIITYNDHDNNLQSVTYELHTTTFSSPGANLIQFMTLTLNDLSKVTRL 150
            NS  LH   +++  ND++       Y  H +  ++ G N+I  +  T  D  K +++
Sbjct: 1744 NSTTLHLNISLVDANDNNPTFTKAAYTAHVSEEATAGTNVI-MVNATERDSGKDSKI 1799


>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 196 CIKLAPGELKVVVCSSYVTL*RLLSWSLYVIILNWLC-SGFELLQINP 336
           CI+LA   L  +V SSY     L  ++ Y +   WLC    +LLQ+ P
Sbjct: 238 CIQLAVSRLSRIVTSSYTD---LQDYTYYFVPAPWLCIKLIKLLQMYP 282


>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1483

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 293 NIITYNDHDNNLQSVTYELHTTTFSSPGANLIQFMTLTLNDLSKVTRLGMATGSLNELR 117
           +++   D D  ++SV +    T  +  G +   FM L   DLS+VTR+      L+E++
Sbjct: 129 SLLARTDVDQKVRSVAFNADGTHLAV-GLSDGSFMVLKARDLSEVTRINDRKEVLHEMK 186


>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 24  AKNIFYDRYERRGSVHFELMVD 89
           AKN F+D  ER GS H +  VD
Sbjct: 706 AKNRFFDGLERLGSAHRDAQVD 727


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,923
Number of Sequences: 59808
Number of extensions: 275993
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)