Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0779
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...    34   0.080
Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical pr...    33   0.11 
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    27   9.1  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +3

Query: 6   IECKAWAKNIFYDRYERRGSVHFELMVD 89
           +EC+A+A NI +D   R G V+FE+MV+
Sbjct: 283 VECRAYALNIEHDISSRLGMVYFEVMVE 310


>Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical
           protein F55F3.3 protein.
          Length = 317

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 6   IECKAWAKNIFYDRYERRGSVHFELMVD 89
           +EC+A+A NI +D   R G V+FEL V+
Sbjct: 280 VECRAYASNIEHDISTRLGMVYFELFVE 307


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -1

Query: 236  HTTTFSSPGANLIQFMTLTLNDLSKVTRLGMATGSLNELRGQQAVCLSAVHHQLEVD 66
            +TTT S   AN    +TLT N  ++ T     T   + L    A  LSAV  Q ++D
Sbjct: 980  NTTTISVQSANATVAVTLTTNTTTQTT--SSTTSFKSNLSTPLAPILSAVCSQPKID 1034


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 338 TGLICSNSKPLHSQFNIITYNDHDNNLQSVTYELHTT 228
           T   C  +KP+ SQF+   + D D N   +  + H T
Sbjct: 469 TNYPCDANKPIPSQFSTYAFCDPDTNRVGILGKRHLT 505


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 426 PDCXISVXEEDVKGQTLVKRSRKVFDYSWLCVXCPWE 536
           P C I++ ++        K +   F++ W+C+  PWE
Sbjct: 283 PKCMITIEKDGGCNHMTCKNTACRFEFCWMCLG-PWE 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,113,464
Number of Sequences: 27780
Number of extensions: 201677
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)