Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0779
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    31   0.69 
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    31   0.69 
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    28   4.9  
At2g40900.1 68415.m05047 nodulin MtN21 family protein similar to...    27   6.4  

>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 5   HRVQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLAG 115
           H V+ +G EHLLR +++T +S L  +   +L T L G
Sbjct: 173 HEVEEIGVEHLLRDVKDTTISTLATEVTAKL-TALKG 208


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 5   HRVQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLAG 115
           H V+ +G EHLLR +++T +S L  +   +L T L G
Sbjct: 173 HEVEEIGVEHLLRDVKDTTISTLATEVTAKL-TALKG 208


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 236 HTTTFSSPGANLIQFMTLTLNDLSKVTRLGMATGSLN 126
           H T  S P +NL   +   L  L+ + RL ++  S+N
Sbjct: 77  HVTVLSLPSSNLTGTLPSNLGSLNSLQRLDLSNNSIN 113


>At2g40900.1 68415.m05047 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 394

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 269 DNNLQSVTYELHTTTFSSPGANLIQFMTLTLNDLSKVTRLGM 144
           D NL  +  +L + TFSS  +N++  +T+ L  L ++ ++ M
Sbjct: 88  DQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVEM 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,822
Number of Sequences: 28952
Number of extensions: 184903
Number of successful extensions: 426
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)