Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0775
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.41 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 572 HIKILQQLRASEKPPHNAHC 513
           H+K   +L   EKP H +HC
Sbjct: 24  HLKTHMRLHTGEKPYHCSHC 43


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 296 FSNYNFYNATFTGFRSLAKGNFNNMTS*PL 207
           +SNYN YN  +  +      N N +   P+
Sbjct: 91  YSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 539  EKPPHNAHCVGMTA 498
            E+PPH+  C  +T+
Sbjct: 1082 EQPPHDTTCTTLTS 1095


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,009
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)