Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0775
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not full...    28   4.0  
At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not full...    28   4.0  
At2g47820.1 68415.m05968 expressed protein                             28   5.2  

>At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 207 NITSFLSKMMRVPDPVSDPFCR*DSIIGFRR*SENGLLAFWTHG 76
           ++ S  SK+ R PD  S+        I  RR S+N L A WTHG
Sbjct: 87  DLASTFSKLNREPDVYSNT-----GPITDRRSSQNSLAAEWTHG 125


>At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 207 NITSFLSKMMRVPDPVSDPFCR*DSIIGFRR*SENGLLAFWTHG 76
           ++ S  SK+ R PD  S+        I  RR S+N L A WTHG
Sbjct: 87  DLASTFSKLNREPDVYSNT-----GPITDRRSSQNSLAAEWTHG 125


>At2g47820.1 68415.m05968 expressed protein
          Length = 805

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 150 RGQKLGLEPSSSWKERKLC*RLRSHV---IKITLCQTSKA 260
           +GQKL     S W++++L  R+ SHV    KITL + SKA
Sbjct: 216 QGQKL----LSGWRQQELLSRISSHVSEECKITLLKVSKA 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,199
Number of Sequences: 28952
Number of extensions: 207839
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)