Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0771
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   4.5  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   5.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   7.8  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 10  IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 186
           I+ TF++FVV ++L + L      ++ K+ +  + +    E    KL  GD F+    P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 46  VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 198
           V +  +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 22  FIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 168
           F+V  V V  A  LTDE+K  L K R +  S +   E+L  K     FK
Sbjct: 238 FLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 305 LLYFQFVFSIRHFSQSDSFLNFPS---LVISCDLISIHRAYFFNGSFSVLKSPVFSL 144
           LL+F F+     FS S SFL F S   +V       +H  +FF     V  S +FSL
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSL 173


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 421 IQPNRSIPH*C*IARTCLSRRYHDY 495
           + P  ++P  C   R C+S+ YH++
Sbjct: 26  VWPLVTVPRQCICLRWCISKEYHEF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,223
Number of Sequences: 5004
Number of extensions: 46024
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)