Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0768
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 56 3e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 44 1e-05
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 44 1e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 42 9e-05
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 40 4e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 35 0.008
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 30 0.22
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 1.6
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 2.1
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 4.8
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 26 4.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 6.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.3
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 25 8.3
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +2
Query: 95 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSIVV 247
+ DS + K+ + + DKLVV+DF ATWCGPCK I PK ++ + SD+ +
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFI 53
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +1
Query: 256 DVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 363
DVD+ +IA+E +++MP+F KNG+K++E GAN
Sbjct: 56 DVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 256 DVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 363
+VDE IAS + +MPTFVF +NGK++D +GAN
Sbjct: 59 NVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94
Score = 34.3 bits (75), Expect = 0.014
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 149 VVIDFMATWCGPCKMIGPKLDEIAAE 226
+ +D A WCGPCK I P ++A++
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASK 47
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +2
Query: 95 IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 226
++ D TR++ DK+ V+DF A WCGPCK + P L++++ +
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKLSEQ 63
Score = 32.7 bits (71), Expect = 0.042
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 256 DVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANV 366
+ D+ DIA + + ++PT V + G++LD GA+V
Sbjct: 73 NADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 47 VILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 226
VI L ++ + ++ ++L+ + A K +I+F ATWCG CK + P +E+ A
Sbjct: 9 VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67
Query: 227 MSDSIVVVKGTL 262
D V+ G +
Sbjct: 68 FEDHNDVLIGKI 79
Score = 30.3 bits (65), Expect = 0.22
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 143 KLVVIDFMATWCGPCKMIGPKLDEI 217
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 256 DVDECEDIASEYNINSMPTFV-FVKNGKKLDEFSGA 360
D D D+A +Y+I PT + F +G + ++S A
Sbjct: 80 DADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +2
Query: 143 KLVVIDFMATWCGPCKMIGPKLDEIAAEMSD--SIVVVK 253
K V+++F A WCG CK + P +++A E SD ++VV K
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAK 412
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 140 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM-SDSIVVVK 253
DK++++ F A WCG CK + P+ + A E+ D I +V+
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVE 77
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 250 EGDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSG 357
E D E D+ SEY+I PT KNGK++ ++SG
Sbjct: 77 EVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 35.1 bits (77), Expect = 0.008
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +2
Query: 83 MSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 241
MS+ I + + L +++++++F A W PCK + D+ A + +++
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAV 53
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 256 DVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 363
+ ++ DIA +++N++P FV + K L SGAN
Sbjct: 58 EAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.22
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +2
Query: 8 TLSLACFLFAF*TVILFLVSIYLPKMSIHIKDSDDLKTRLAEAGDKLVVIDFMATWCGPC 187
TL LACF +F S +I + +S + + + G LVV F A WCG C
Sbjct: 10 TLFLACFSLVSG---VFGYSPMFGSNTIEL-NSKNFRKFVKAKGPSLVV--FYAPWCGYC 63
Query: 188 KMIGPKLDEIAAEMSDSIVV 247
K + P ++A+ + + V
Sbjct: 64 KKLVPTYQKLASNLHSLLPV 83
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 253 GDVDECEDIASEYNINSMPTFVFVKNGKKLDE 348
G+VD ++++S NI ++PT +NG+ ++E
Sbjct: 83 GEVDCSKELSSCANIRAVPTLYLYQNGEIVEE 114
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 206 LDEIAAEMSDSIVVVKGTLMSARTSP 283
LDE+ M DS+ VVK TL S + P
Sbjct: 390 LDEMERSMHDSLSVVKRTLESGKVVP 415
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 101 DSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSIV 244
+ D + RL EAG + +A CGPC + + D+IA+ ++I+
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIASGEPNAIL 473
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 429 RAAYNFSLYLLVFKDSCFEFVDVSAR-EFVQFLAILNEDERRHRVNVVLAGDVL 271
RA ++ ++L KD+CF +V+A E++ + + D + + + +G ++
Sbjct: 242 RALHSLPKHILPEKDACFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGHIM 295
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 4 LYVVTCVFLIC-ILNCDIIFSFNL 72
+Y+ C+F + +L+C IIF F L
Sbjct: 67 IYLAVCLFFLASVLSCAIIFRFYL 90
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 521 KFITALKTFFIHLLKTVYMFFFFNSILVSI 432
KFI + FF + T Y F F ++L+ +
Sbjct: 436 KFILDSQNFFFESINTEYSFIIFTNLLMHL 465
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 285 AGDVLALINVPFTTTMESDISA-AISSSLGPII-LHGPHQVAMKSITTSLSPASASLVF 115
+G + IN+PFT T + I+A L + HG ++ IT+ S +AS++F
Sbjct: 204 SGHIPTSINIPFTETTAAGITAPKPEEDLEKVFSSHGLTDKSVPIITSCGSGVTASVLF 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,522
Number of Sequences: 5004
Number of extensions: 41740
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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