Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0768
         (593 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    78   2e-16
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.80 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   0.80 
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    24   3.2  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          24   4.3  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   5.6  
AM182454-1|CAJ65692.1|  182|Anopheles gambiae globin 2 protein.        23   7.4  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    23   7.4  
AF043441-1|AAC05666.1|  231|Anopheles gambiae putative pupal-spe...    23   7.4  
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          23   9.8  
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          23   9.8  
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          23   9.8  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 77.8 bits (183), Expect = 2e-16
 Identities = 32/53 (60%), Positives = 41/53 (77%)
 Frame = +2

Query: 95  IKDSDDLKTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSIVVVK 253
           +KDS+D   +L  AGD+LVV+DF ATWCGPCK+I PKL+E   + +D IVVVK
Sbjct: 5   VKDSEDFNNKLEAAGDQLVVVDFFATWCGPCKVIAPKLEEFQNKYADKIVVVK 57



 Score = 56.4 bits (130), Expect = 7e-10
 Identities = 22/38 (57%), Positives = 32/38 (84%)
 Frame = +1

Query: 256 DVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 369
           DVDECE++A++YNI SMPTF+F+K  + + +FSGAN +
Sbjct: 59  DVDECEELAAQYNIASMPTFLFIKRKEVVGQFSGANAE 96


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -1

Query: 542 QKKLISFKFITALKTFFIHLLKTVYMFFFFNSILVSIGGLRTTLVSIYLCLRIVVLSLST 363
           +K  +S   + +L  FF+ +++ +        +L         LVSI +C+ +VVL++  
Sbjct: 273 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHF 332

Query: 362 LAPE 351
            +P+
Sbjct: 333 RSPQ 336


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -1

Query: 542 QKKLISFKFITALKTFFIHLLKTVYMFFFFNSILVSIGGLRTTLVSIYLCLRIVVLSLST 363
           +K  +S   + +L  FF+ +++ +        +L         LVSI +C+ +VVL++  
Sbjct: 273 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHF 332

Query: 362 LAPE 351
            +P+
Sbjct: 333 RSPQ 336


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 557 RGLQTQKKLISFKFITALKTFFIHLLKTVYMFFFFNSILVSI 432
           R  +   KLI+ + +  L  F I LL  + ++  FN  L  +
Sbjct: 136 RSREFMLKLIAIRMLVNLVVFVILLLAAITIYVLFNVSLAEL 177


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 123 GWRKQATSSS*STSWRPGADRAR*SGLNW 209
           GW+ ++ SS  +    PGA RA    L+W
Sbjct: 214 GWKYRSISSLHAPPSHPGAHRAAEPRLDW 242


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 500 TFFIHLLKTVYMFFFFNSILVSIGGLRTTLVSIYLCLRIVVLSLS 366
           T  I +L ++ +FF   + ++    L   L+  YL   ++++SLS
Sbjct: 278 TLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMILVSLS 322


>AM182454-1|CAJ65692.1|  182|Anopheles gambiae globin 2 protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -3

Query: 417 NFSLY---LLVFKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVPFT 247
           N SLY   + VFK +    ++   ++ V F A L +  RRH+   V   D+L +  V   
Sbjct: 61  NKSLYDQAIHVFK-AVGALIEYGFKDPVLFDATLRKITRRHKDRPVYTEDILTIGEV-LL 118

Query: 246 TTMESDISAAISSSL 202
             +E  +   +S SL
Sbjct: 119 NYLEQALGRQMSDSL 133


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 488 HLLKTVYMFFFFNSILVSIGGLRTTLVS 405
           H+L+    FFF   ++VS    ++ L++
Sbjct: 132 HVLERTQSFFFEQEVIVSTDAAKSNLIA 159


>AF043441-1|AAC05666.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2b protein.
          Length = 231

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 252 FTTTMESDISAAISSSLGPIILHGPHQVAMKSITTSLSPA 133
           F   + + + AA+S+ L P+  HG    +  SI    +PA
Sbjct: 3   FKFVLLATLVAAVSAGLLPVANHGSIATSHSSIQHHAAPA 42


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 205 FRPDHLARSAPGRHEVDHDELVAC 134
           F+P  L   A G HE  ++ ++ C
Sbjct: 263 FQPSFLGMEACGIHETTYNSIMKC 286


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 205 FRPDHLARSAPGRHEVDHDELVAC 134
           F+P  L   A G HE  ++ ++ C
Sbjct: 263 FQPSFLGMEACGIHETTYNSIMKC 286


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 205 FRPDHLARSAPGRHEVDHDELVAC 134
           F+P  L   A G HE  ++ ++ C
Sbjct: 263 FQPSFLGMEACGIHETTYNSIMKC 286


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,819
Number of Sequences: 2352
Number of extensions: 10480
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)