Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0768
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.24 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.24 
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   3.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -1

Query: 542 QKKLISFKFITALKTFFIHLLKTVYMFFFFNSILVSIGGLRTTLVSIYLCLRIVVLSLST 363
           +K  +S   + +L  FF+ +++ +        +L         LVSI +C+ +VVL++  
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHF 333

Query: 362 LAPE 351
            +P+
Sbjct: 334 RSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = -1

Query: 542 QKKLISFKFITALKTFFIHLLKTVYMFFFFNSILVSIGGLRTTLVSIYLCLRIVVLSLST 363
           +K  +S   + +L  FF+ +++ +        +L         LVSI +C+ +VVL++  
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHF 333

Query: 362 LAPE 351
            +P+
Sbjct: 334 RSPQ 337


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 205 FRPDHLARSAPGRHEVDHDELVAC 134
           F+P  L   A G HE  ++ ++ C
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKC 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,133
Number of Sequences: 438
Number of extensions: 2659
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)