Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0764
         (552 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D4D3 Cluster: Chromosome undetermined scaffold_37, wh...    36   0.83 
UniRef50_Q239F5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q5HY48 Cluster: Tafazzin (Cardiomyopathy, dilated 3A (X...    33   5.8  
UniRef50_Q16635 Cluster: Tafazzin; n=51; Euteleostomi|Rep: Tafaz...    33   5.8  

>UniRef50_A0D4D3 Cluster: Chromosome undetermined scaffold_37, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_37,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 195

 Score = 35.5 bits (78), Expect = 0.83
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = -3

Query: 280 TENQTLTLPHSSNHSLEYNN*ADMRLLTSS*VNIIKSVNNFFIINTLLLASDVCNLVSNG 101
           +EN TL L  +  H L   N   M++L    + I+  + N   + TLL+ + +  L+S G
Sbjct: 29  SENITLELRLAYIHKLMMENEVLMKILILPYMQILSQIKNQLCMTTLLILNLIPELISQG 88

Query: 100 IFEH 89
            +EH
Sbjct: 89  QYEH 92


>UniRef50_Q239F5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1943

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 39  SSVLNKYTKFRVNPSKPCSKIPLLTKLHTSEANKSVLMIKKLLTDFIMLTYELVRSRMSA 218
           S +LN    F +N  +P  ++ L+  L+ S     +  +    T+F++    ++RSR S 
Sbjct: 327 SCILNNKLLFNINKVRPIDQVNLIGHLNESFREFYLQNVYSNYTEFLIAYLAMIRSRPSK 386

Query: 219 QLL 227
           Q+L
Sbjct: 387 QIL 389


>UniRef50_Q5HY48 Cluster: Tafazzin (Cardiomyopathy, dilated 3A
           (X-linked); endocardial fibroelastosis 2; Barth
           syndrome); n=6; Euteleostomi|Rep: Tafazzin
           (Cardiomyopathy, dilated 3A (X-linked); endocardial
           fibroelastosis 2; Barth syndrome) - Homo sapiens (Human)
          Length = 278

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 20/59 (33%), Positives = 35/59 (59%)
 Frame = +3

Query: 63  KFRVNPSKPCSKIPLLTKLHTSEANKSVLMIKKLLTDFIMLTYELVRSRMSAQLLYSKL 239
           K  V   KP S +P+L +L     NKS + ++K LTDFI   ++ ++++  A+ L++ L
Sbjct: 220 KITVLIGKPFSALPVLERLRAE--NKSAVEMRKALTDFIQEEFQHLKTQ--AEQLHNHL 274


>UniRef50_Q16635 Cluster: Tafazzin; n=51; Euteleostomi|Rep: Tafazzin
           - Homo sapiens (Human)
          Length = 292

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 20/59 (33%), Positives = 35/59 (59%)
 Frame = +3

Query: 63  KFRVNPSKPCSKIPLLTKLHTSEANKSVLMIKKLLTDFIMLTYELVRSRMSAQLLYSKL 239
           K  V   KP S +P+L +L     NKS + ++K LTDFI   ++ ++++  A+ L++ L
Sbjct: 234 KITVLIGKPFSALPVLERLRAE--NKSAVEMRKALTDFIQEEFQHLKTQ--AEQLHNHL 288


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,802,782
Number of Sequences: 1657284
Number of extensions: 8210406
Number of successful extensions: 17626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17624
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)