Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0764
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   1.8  
SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   5.6  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   9.8  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 33  ELSSVLNKYTKFRVNPSKPCSKIPLLTK 116
           E +SV NKY  F   PS+ C   PL ++
Sbjct: 363 EFNSVYNKYFDFTNPPSRSCVAAPLASE 390


>SPAC16E8.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -1

Query: 363 QSRQRVYVPVFI-AIPKSNVMHLKYCDLKPKIKL 265
           Q+R++ ++ ++  AI  SNV+ L++C  K ++KL
Sbjct: 41  QTRKKSHIAMYAEAITHSNVLRLEHCYQKMEMKL 74


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 82  QNHVQRFHYLLSYIRLK 132
           QNH+  F+ LL ++R+K
Sbjct: 430 QNHIDEFYSLLKFLRIK 446


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 49  LISIPNFELIRQNHVQRFHYLLSYI 123
           ++ +P+  L  ++HV  FHY L  +
Sbjct: 217 VVELPDISLFPKSHVVIFHYYLGIV 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,046
Number of Sequences: 5004
Number of extensions: 38835
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)