Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0764
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 29 1.9
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 29 1.9
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 29 1.9
05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727 29 3.3
01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356... 28 4.3
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 28 5.7
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 7.5
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 27 7.5
02_05_1071 - 33876061-33877308,33877593-33877898 27 7.5
>05_05_0034 -
21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 18 FFFNIELSSVLNKYTKFRVNPSKPCSKIPLLTKLHTSE 131
F N +L+ +L++Y KP +IPL T H SE
Sbjct: 495 FGINSKLNKILDEYIHLPEAAPKPSEEIPLATSGHVSE 532
>01_06_0923 +
33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 93 SKIPLLTKLHTSEANKSVLMIKKLLTDFIMLTYELVRSRMSA 218
S +P+L L TS+A + ++ +LL D I + ++RS +SA
Sbjct: 826 SFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSA 867
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 93 SKIPLLTKLHTSEANKSVLMIKKLLTDFIMLTYELVRSRMSA 218
S +P+L L TS+A + ++ +LL D I + ++RS +SA
Sbjct: 913 SFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSA 954
>05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727
Length = 489
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 129 EANKSVLMIKKLLTDFIMLTYELVRSRMSAQLLYSKL 239
E ++V + KKL+TD L Y L R++ LL KL
Sbjct: 19 ELRRAVKLRKKLMTDDERLIYSLRRAKKKVALLLQKL 55
>01_06_1353 +
36533795-36533827,36533904-36533993,36535595-36535681,
36535775-36535843,36536472-36536552,36536641-36536712,
36536814-36536874,36536960-36537062,36537223-36537318,
36537394-36537440,36538052-36538299
Length = 328
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 410 TFIFITFQVWNVHTIIVLSXXFF 478
TFIFI+F +W+ H I S F+
Sbjct: 85 TFIFISFLLWSFHPFIYHSKRFY 107
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 64 NFELIRQNHVQRFHYLLSYIRLKLIKAY 147
N ++++QN VQ++ YL+ ++R K Y
Sbjct: 225 NIQILQQNMVQKYRYLILFLREHGSKVY 252
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 178 IKSVNNFFIINTLLLASDVCNLVSNGIFEHGFDGLTR 68
I+ +N + + +++ C++++N + E FD LTR
Sbjct: 819 IECLNTYKTLRSIVCIGVGCDIITNSVLETWFDHLTR 855
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 18 FFFNIELSSVLNKYTKFRVNPSKPCSKIPLLTKLHTSE 131
F N +L+ +L++Y KP +IPL H SE
Sbjct: 500 FGINSKLNKILDEYIHLPEAAPKPSEQIPLAASGHVSE 537
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 30 IELSSVLNKYTKFRVNPSKPCSKIPLLTKLH-TSEANK 140
+E+ S ++ + FR++PS ++ L+ K+H TS+A +
Sbjct: 101 LEILSWMDSHNDFRLSPSDHMVRLDLIAKVHGTSQAEE 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,371
Number of Sequences: 37544
Number of extensions: 201504
Number of successful extensions: 350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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