Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0764
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-5|AAK73870.1|  151|Caenorhabditis elegans Hypothetical ...    31   0.73 
AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical ...    31   0.73 
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    29   2.2  
U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    27   6.8  

>AF098992-5|AAK73870.1|  151|Caenorhabditis elegans Hypothetical
           protein F53C3.6b protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 265 KFDFRFKIAVFQMHHITFGNGNKHGNV-YSLTRLSSC 372
           K D++      ++ H+TF NG K GN+ +      SC
Sbjct: 36  KCDYQITYEDMELRHVTFANGTKPGNITFGCAEYQSC 72


>AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical
           protein F53C3.6a protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 265 KFDFRFKIAVFQMHHITFGNGNKHGNV-YSLTRLSSC 372
           K D++      ++ H+TF NG K GN+ +      SC
Sbjct: 135 KCDYQITYEDMELRHVTFANGTKPGNITFGCAEYQSC 171


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 205 VACLLNCYTPNYDLKN-AEELKFDFRFKIAVFQMHHITFGNGN 330
           +A   NC     DL N AE+ + DF   + + + HH+ +GN N
Sbjct: 438 IASQENCSNKE-DLTNRAEDFQSDFVKTMDIIKEHHVAYGNSN 479


>U80440-3|AAK21470.2|  380|Caenorhabditis elegans Hypothetical
           protein T21E12.2 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 151 INTLLLASDVCNLVSNGIFEHGFDGLTRNLVYLLRTDDSSILKKKE 14
           +++LLLA    NLV+        D + + L+ LL T +SS    KE
Sbjct: 217 VSSLLLARTTSNLVAINYLARQNDKIQQKLIALLETSESSENASKE 262


>AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical
           protein Y6E2A.1 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = +1

Query: 265 KFDFRFKIAVFQMHHITFGNG-------NKHGNVYSLTRLSSCK*IAHLIVIVTENVYIY 423
           KF  + K+ VFQ  H   GN        NK   +Y L    SC     ++ ++T N Y  
Sbjct: 14  KFSQKVKLEVFQKKHKKLGNSIFSGIFKNKQAMIYVLGMYCSC--YGMMLSLLTINFYYR 71

Query: 424 YI 429
           Y+
Sbjct: 72  YL 73


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 373 YKTTVASTSIRSRVYCHSQK*CDASEILRS 284
           Y  T +   +RSRVYC   K  DA  I +S
Sbjct: 361 YLETFSGRGVRSRVYCDPTKLVDAQLITKS 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,388
Number of Sequences: 27780
Number of extensions: 209710
Number of successful extensions: 457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)