Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0764
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.22 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.22 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -2

Query: 224  QLSRHATSHKLIG 186
            QLSRHATSH+L G
Sbjct: 1452 QLSRHATSHELKG 1464


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -2

Query: 224  QLSRHATSHKLIG 186
            QLSRHATSH+L G
Sbjct: 1448 QLSRHATSHELKG 1460


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 424 NKYKRSPSQ*RLSGRFIYKTTV 359
           ++YKRS S+   S +FI  TTV
Sbjct: 451 HEYKRSVSRESNSNQFILMTTV 472


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 344 TFPCLLPFPK 315
           T PCLLP PK
Sbjct: 625 TLPCLLPRPK 634


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 344 TFPCLLPFPK 315
           T PCLLP PK
Sbjct: 593 TLPCLLPRPK 602


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 281 LRSQYFRCITLLLGMAINTGTYTR*RDCRLVNESPT*SLL*RRTFIFI 424
           LR   F+   +L+G   N GTY    D   + E    S L R  F+ I
Sbjct: 364 LREADFKDTEILIGNNENEGTYFILYDFNDIFEKDQASFLERERFLGI 411


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 281 LRSQYFRCITLLLGMAINTGTYTR*RDCRLVNESPT*SLL*RRTFIFI 424
           LR   F+   +L+G   N GTY    D   + E    S L R  F+ I
Sbjct: 364 LREADFKDTEILIGNNENEGTYFILYDFNDIFEKDQASFLERERFLGI 411


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 85  FDGLTRNLVYLLRTDDSS 32
           +DG T +L +L +T+DS+
Sbjct: 168 YDGYTVDLRHLAQTEDSN 185


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 202 LTSS*VNIIKSVNNFFIINTLLLASDVCNLVSNGIFEHGFDGLTRNLVYLLRTDDSSILK 23
           LT   +  ++ +   +  N +L  S + N+  NGI     +     L   L T+DS+  K
Sbjct: 162 LTEQNLEELRDLKETYPFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSK 221


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -3

Query: 202 LTSS*VNIIKSVNNFFIINTLLLASDVCNLVSNGIFEHGFDGLTRNLVYLLRTDDSSILK 23
           LT   +  ++ +   +  N +L  S + N+  NGI     +     L   L T+DS+  K
Sbjct: 200 LTEQNLEELRDLKETYPFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSK 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,210
Number of Sequences: 438
Number of extensions: 3027
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)