Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0758
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.71 
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    28   0.93 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   0.93 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.2  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   3.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.0  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   5.0  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 286 HFSQSDVLLEFPSLVISCDLISIHRAYFFNGSFSVL 179
           HFS++ +L +FP+L++ C    + R +  + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +2

Query: 194 TIEEVCSMYADQITADDQGREFKKDVALAKVPNAEDKLKVEK 319
           T +E+C    DQI  + +  EF+K+  L ++ NA++KL+ E+
Sbjct: 314 TNQELC----DQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQ 351


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = -3

Query: 321 SFSTFNLSSALGTLARATSFLNSRPWSSAV--I*SAYIEHTSSMVRFQS*SRLSSVCSPI 148
           S ST N+ S+    A +T  L+S   SS+   + ++YI + SS V   S   LSS  + +
Sbjct: 512 SSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSS--NSL 569

Query: 147 VHQLSSRRDSRLCVSSSS 94
               SS   S +  +SSS
Sbjct: 570 SSSTSSASTSYIPSASSS 587


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 21  CIMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 182
           C +  F+V  V V  A  LTDE+K  L K R +  S +   E+L  K     FK
Sbjct: 233 CAIVIFLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 24  IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 200
           I+ TF++FVV ++L + L      ++ K+ +  + +    E    KL  GD F+    P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -3

Query: 339 ARQASISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEH--TSSMVRFQS*SRLS 166
           A   S S S+  LSS+  T   ++SF+ S   SS+   S+      +SS     S S  S
Sbjct: 54  ATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113

Query: 165 SVCSPIVHQLSSRRDSRLCVSSSS 94
              S   H LSS   S +  SSSS
Sbjct: 114 PTSSSSSHALSSSSSSLVASSSSS 137


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 31/82 (37%), Positives = 43/82 (52%)
 Frame = -3

Query: 330 ASISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEHTSSMVRFQS*SRLSSVCSP 151
           +S S STF  SSA  T + ++S+L+    SS+V+ S+    +SS     S S LS+   P
Sbjct: 190 SSTSSSTF--SSAAPT-STSSSYLS----SSSVVSSSSSPSSSSSSTLTS-SSLSTSSIP 241

Query: 150 IVHQLSSRRDSRLCVSSSSPSA 85
                SS   S L  SSSS +A
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTA 263



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -3

Query: 330 ASISFSTFNLSSALGTLARATSFLNSRPWS-SAVI*SAYIEHTSSMVRFQS*SRLSSVCS 154
           +S S ST + SS+  ++  ++S  +S P S S+ I S+    +S      + S  SS  S
Sbjct: 256 SSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS 315

Query: 153 PIVHQLSSRRDSRLCVSSSSPSA 85
                LSS   S     SSSP++
Sbjct: 316 SFSSTLSSSSMSSSSSFSSSPTS 338


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 313 YFQFVFSIRHFSQSDVLLEFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSL 158
           Y  + FS  HF  S +     S  + C L +++  +  + SF+V+   +F L
Sbjct: 700 YVVYYFSSLHFGASQISSAIGSFAVGC-LGNMYSHFIKSSSFAVVLPAIFVL 750


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -3

Query: 327 SISFSTFNLSSALGTLARATSFLNSRPWSSAVI*SAYIEHTSSMVRFQS*-SRLSSVCSP 151
           S S ST + S     +    S  +S P SS+   S+ I   SS +   S  S  SSV S 
Sbjct: 520 STSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSI 579

Query: 150 IVHQLSSRRDSRLCVSSSSPSA 85
           +    SS   + L +SSSS S+
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSS 601


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 218 YADQITADDQGREFKKDVALAKVPNAEDKLKVEKLIDAC 334
           Y D+       R  + DV+LA++ +  D  K+  ++D C
Sbjct: 374 YLDENAGKLSNRMKRGDVSLAQISSGGDLKKINHVLDTC 412


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 60  VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 212
           V +  +TD    N+ +     L E   + + ++K KT DFK +   +  YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,756
Number of Sequences: 5004
Number of extensions: 42475
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)