Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0758
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    31   0.80 
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,...    29   1.9  
At3g19900.1 68416.m02520 expressed protein                             29   1.9  
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    28   4.3  
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    28   5.7  
At1g77270.1 68414.m08999 expressed protein                             27   7.5  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    27   9.9  
At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain...    27   9.9  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   9.9  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 81  DEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGNS 260
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDG  
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGKE 133

Query: 261 RRT 269
             T
Sbjct: 134 DMT 136


>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 866

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 316 LYFQFVFSIRHFSQS--DVLLEFPSLVISCDLISIHRAYFFNG 194
           +YF+F+  I HF +S  D+L EF    IS  L  +H+  F +G
Sbjct: 558 IYFEFISRIPHFIKSVWDILSEF--FDISDTLDMVHKTLFVHG 598


>At3g19900.1 68416.m02520 expressed protein
          Length = 222

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 167 LQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQDNADDEHDKSLHD 24
           L F H L +    G+T    F ++  ++  EG + DN+DDE  +SL D
Sbjct: 42  LAFSHSLCLKTTYGKTDRRKFSRICSIVDDEG-NLDNSDDEEKESLDD 88


>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 260 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 373
           KK   L + P A+D  ++EK+++AC  N       T W
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 395 GGSISHNSRLFGEGCCLCWPGKRQS 321
           G S+ H SR     C LCWPG R+S
Sbjct: 443 GFSMGH-SRFPKTDCPLCWPGSRRS 466


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 102 KKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ---LMTKDGNSRRTS 272
           KK +   +++T   ++++      D  T+    K  +LC  + +    L+ +DG ++RT+
Sbjct: 174 KKPKKSVVAKTIVWQEIIEIESATDTDTDEVGGKTLSLCGKVDASGDDLLARDGKTKRTN 233

Query: 273 LWLKCL 290
           L + C+
Sbjct: 234 LQIVCV 239


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 108 HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCML 224
           H  D + E  +    + K++T GD+K EN  L +Y  C+L
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVL 266


>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
          Length = 653

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 200 EEVCSMYADQITADDQGREF 259
           E++ ++  D++TADDQG +F
Sbjct: 435 EDLVNLREDEVTADDQGNKF 454


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 290 NAEDKLKVEKLIDACLANKGNSPHQTAWNYVKC 388
           ++  KL++ KL D  L +   +P +  WN  KC
Sbjct: 333 DSSPKLQILKLTDVYLHDNKTNPDERKWNPPKC 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,604
Number of Sequences: 28952
Number of extensions: 231936
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)