Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0754
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    66   5e-12
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = +1

Query: 292 HRRLSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTK 465
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENAL 172

Query: 466 QRLFLTILLGFYF 504
           + L++TI L F F
Sbjct: 173 KGLYMTIALSFLF 185



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 159 RDISREGTYQGKHTILVNKGL 221
           RD+S E    G HT  V KGL
Sbjct: 69  RDMSTEANIHGAHTKAVTKGL 89


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 427  HHSLIENNFSQTKQRLFLTILLGFYFTIYKHMNILGSFFY 546
            H S ++    Q+K+ +FL +L G  F      N + +FFY
Sbjct: 3010 HLSKVKTVKLQSKEHIFLQLLKGVNFEFSVPENSVRTFFY 3049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,024
Number of Sequences: 5004
Number of extensions: 27328
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)