Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0753
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   3.5  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    25   6.1  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   8.0  

>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 545 QTKLD*ICSYNINMKK*RNELYTKSRSHLPISIVPNTK 432
           Q+ LD +C Y  N  +  N     + S  P+S+VP+++
Sbjct: 339 QSVLDAVCDYLPNPSEVENIALNAADSEKPVSLVPSSE 376


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 65  LFDTHLASVFVTVLYTSLMRIFNNNNI 145
           +F T   S  + V Y  ++R+FN NN+
Sbjct: 308 IFWTSSQSSLMFVFYEGIIRLFNKNNV 334


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 44  DHATFFFLFDTHLASVFVTVLY--TSLMRIFN 133
           DH  F  L+DT L S F  V++  T+  R +N
Sbjct: 374 DHVNFALLWDTSLESSFNFVMHDATTFARYYN 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,946
Number of Sequences: 5004
Number of extensions: 38766
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)