Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0752
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   1.9  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.5  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   7.6  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   7.6  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   7.6  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +1

Query: 73  NLRECMDFY--FQCCSMEANCDIMSIMAATLANGGICPITDEKVLRPDSVRNVLSLMHSC 246
           +L EC+ +   FQ    +   D+  I        GI  +    VL   SV N   +  + 
Sbjct: 284 SLAECLVYSLGFQVTKAKQVSDLTDISLCMDRAIGIALVLRNSVL---SVENAKHVAQTK 340

Query: 247 GM*TTLDSSLSKWDSLPNLEYRAPCLLWSQMLWAYVH 357
            + + L++S+    +  NLE+   CL  S+M+ +Y+H
Sbjct: 341 LVISVLEASIRCAKTFNNLEFLHYCLDISEMISSYLH 377



 Score = 25.8 bits (54), Expect = 4.4
 Identities = 24/100 (24%), Positives = 40/100 (40%)
 Frame = +1

Query: 22  YALGFYMREHKCYPEKTNLRECMDFYFQCCSMEANCDIMSIMAATLANGGICPITDEKVL 201
           Y+LGF + + K   + T++  CMD       +  N  +    A  +A   +     E  +
Sbjct: 291 YSLGFQVTKAKQVSDLTDISLCMDRAIGIALVLRNSVLSVENAKHVAQTKLVISVLEASI 350

Query: 202 RPDSVRNVLSLMHSCGM*TTLDSSLSKWDSLPNLEYRAPC 321
           R     N L  +H C   + + SS    +   N+ Y A C
Sbjct: 351 RCAKTFNNLEFLHYCLDISEMISSYLHVEDEKNVFYLALC 390


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 100  NKSPYIPSDLFSRGSICVPSCKNPEHS 20
            N+ PY+P D       CV   K PE+S
Sbjct: 1598 NEPPYVPDDYLPSVMTCVNYLKLPEYS 1624


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 91  DFYFQCCSMEANCDIMSIMAATLANGGICPITDEKVLRPDSVRN 222
           DF F+    E+    +S+ A  L + G+ P+T  ++L  D  +N
Sbjct: 173 DFRFRELPSESRLRTVSLGAGVLLDMGVYPLTWSRLLLYDDPKN 216


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 402 VSLCSY-FPMDLEAVTMYICP*HLGPQ*AW 316
           + LC+  F + ++ +T   CP H+GP   W
Sbjct: 90  IELCNQKFEIWVDGLTFLGCPVHIGPNGEW 119


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 136 MSIMAATLANGGICPITDEKVLRPDSVRNVLSLMHSCGM*TTLDSSLSKWDSLPNLEY 309
           MS + + L +     I + K    D V NV+ LMH  G      ++++K   LPN  Y
Sbjct: 1   MSSLNSVLPSNACAEIIEGK----DKVHNVVILMHGLGDSHKSFANMAKNVPLPNTSY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,688
Number of Sequences: 5004
Number of extensions: 52495
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)