Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0752
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    31   0.63 
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    30   1.5  
07_03_1160 - 24430240-24431268                                         29   3.4  

>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 37  YMREHKCYPEKTNLRECMDFYFQCCSMEANCDIMSIMAATLANGGICP 180
           Y+ +H  +  +  +RE +DF  +C    A  D++S +     N GI P
Sbjct: 249 YVSQHDLHNPEMTVRETLDFSRRCLGSGARYDMLSELTRRERNAGIKP 296


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 37  YMREHKCYPEKTNLRECMDFYFQCCSMEANCDIMSIMAATLANGGICP 180
           Y+ ++  +  +  +RE +DF  +C  + A  D+++ +A    N GI P
Sbjct: 278 YVSQYDLHNAEMTVRETLDFSGRCLGIGARYDMLAELARRERNAGIKP 325


>07_03_1160 - 24430240-24431268
          Length = 342

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 400 KPLQLFPNGSRGGDHVHMPITFGTTISMAPDTPDLAGSP 284
           +P Q  PNG    D + MP   G+  S AP  PD +  P
Sbjct: 180 QPPQPIPNGPPKPDMLPMPKPDGSPNSYAPSVPDQSTQP 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,918,246
Number of Sequences: 37544
Number of extensions: 360486
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)