Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0752
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 32   0.28 
SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)                    28   4.5  
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              28   6.0  

>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 24/109 (22%), Positives = 52/109 (47%)
 Frame = +1

Query: 106 CCSMEANCDIMSIMAATLANGGICPITDEKVLRPDSVRNVLSLMHSCGM*TTLDSSLSKW 285
           CC  + N    ++  + L    I   TD ++  PD+VRN L+++ +    + +D+S+ + 
Sbjct: 103 CCGRQINFSGSNMPTSNLRISRILSETDREIA-PDAVRNRLNVLQNNDNASAVDASVERS 161

Query: 286 DSLPNLEYRAPCLLWSQMLWAYVHGHRL*IHWEIAAEAYSSAMT*LNDS 432
             +P      P L+ +       HG+   + +++  E   + +T +ND+
Sbjct: 162 SPIPTHTTFKPDLIETPKGTKQRHGNVKTVEFKV-VEQDGNVITLVNDA 209


>SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1079

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 70  TNLRECMDFYFQCCSMEANCDIMSIMAATLANGGICPITDEKVLRPDSVR 219
           T L++C   +  CC        M ++A ++  G   P +DE+++    VR
Sbjct: 208 TELKQCYKTFIYCCQARYGKSDMGLLARSMDFGDFGP-SDEELMENSQVR 256


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 69  NKSEGMYGLLFPVLFHGSKLR 131
           NK  G  G LFP L HG++LR
Sbjct: 585 NKVSGFTGYLFPSLPHGARLR 605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,385
Number of Sequences: 59808
Number of extensions: 403273
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)