Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0752
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37280.1 68415.m04573 ABC transporter family protein similar ...    31   0.70 
At5g39430.1 68418.m04776 hypothetical protein                          30   1.2  
At4g18220.1 68417.m02707 purine permease family protein similar ...    29   2.8  
At4g00905.1 68417.m00123 expressed protein                             28   4.9  
At3g10800.1 68416.m01300 bZIP transcription factor family protei...    28   4.9  
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    27   8.6  
At3g22620.1 68416.m02856 protease inhibitor/seed storage/lipid t...    27   8.6  
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr...    27   8.6  

>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 37  YMREHKCYPEKTNLRECMDFYFQCCSMEANCDIMSIMAATLANGGICP 180
           Y+ +H  +  +   RE +DF  +C  + +  DIM  ++    +GGI P
Sbjct: 217 YISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGGIIP 264


>At5g39430.1 68418.m04776 hypothetical protein 
          Length = 511

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 293 RESHFESELSRVVYMPQLCINDSTLRTESGRNTFSSV 183
           +E   +S LSR++ +P +  ND TL + + +N  S+V
Sbjct: 165 KEKALKSNLSRLMPLPTVSFNDKTLNSPTSQNRKSAV 201


>At4g18220.1 68417.m02707 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 344

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 242 LCINDSTLRTESGRNTFSSVIGQIPPLAKVAAIIDIISQFASMEQHWK 99
           L +     R    + TFS VI  I  ++ VA+ + ++  FAS E  WK
Sbjct: 176 LSLQQLAFRKVLKKQTFSEVINMIIYMSLVASCVSVVGLFASSE--WK 221


>At4g00905.1 68417.m00123 expressed protein
          Length = 263

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 252 VDYSGQFAFKVGLPAKSGVSGAMLIVVPNVMGICTWSPPLDPLGNSCRGLQFCDDLIK 425
           V  SGQ +  +G P  + +S  + +++PN +G+ T +  +  +      +   +D+IK
Sbjct: 178 VGRSGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIK 235


>At3g10800.1 68416.m01300 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; contains similarity to TGACG-sequence specific
           DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana
           tabacum]
          Length = 675

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 12  RPKLCSGFLHEGTQMLPRENKSEGMYGLLFPVLFHGSKLRY-NVNYGGNFG 161
           RPK      +EG   L ++  S    G+LF V   G+ + + NVN+GG  G
Sbjct: 304 RPKKAESKKNEGKSKL-KKVASISFIGILFFVFLFGTLVPFMNVNFGGERG 353


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 37  YMREHKCYPEKTNLRECMDFYFQCCSMEANCDIMSIMAATLANGGICPITD 189
           Y+ ++  +  +  +RE +DF  +C  + +  DIM  ++      GI P T+
Sbjct: 252 YISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTE 302


>At3g22620.1 68416.m02856 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 203

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 340 TFGTTISMAPDTPDLAGSPTLKANCPE*STCR 245
           TFG ++S  P+T  +   PT  A  P+  T R
Sbjct: 123 TFGPSMSPGPETDPIVPEPTPAAQTPQSDTTR 154


>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
           protein contains Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 830

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 350 YAHNIWDHNKHGARYSRFGRESHFESELSRVVYMPQLCIND 228
           YA  +W+  +  A       E  FE+E+ R V++  LC+ D
Sbjct: 728 YAWKLWNTGEDIALVDPVIFEECFENEIRRCVHVGLLCVQD 768


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,117
Number of Sequences: 28952
Number of extensions: 286465
Number of successful extensions: 733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)