Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0750
         (405 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CG34 Cluster: Chromosome undetermined scaffold_178, w...    33   2.9  
UniRef50_Q28GU7 Cluster: Novel protein containing TNFR/NGFR cyst...    31   6.6  
UniRef50_Q60RR4 Cluster: Putative uncharacterized protein CBG212...    31   6.6  
UniRef50_A3GIC4 Cluster: Lactose Permease; n=1; Pichia stipitis|...    31   6.6  
UniRef50_A4SBE0 Cluster: Predicted protein; n=1; Ostreococcus lu...    31   8.7  
UniRef50_A0DPT8 Cluster: Chromosome undetermined scaffold_59, wh...    31   8.7  

>UniRef50_A0CG34 Cluster: Chromosome undetermined scaffold_178,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_178,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 105

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 239 IMKDIVP*RPILVLNLPNV--LRHFYRNFSRFKFYGNKELT 123
           +M+D+VP R  L LN P+V  LRH    + +F FY   E T
Sbjct: 41  VMRDLVPLRKKL-LNEPDVDYLRHLLSKYKKFDFYKENEFT 80


>UniRef50_Q28GU7 Cluster: Novel protein containing TNFR/NGFR
           cysteine-rich region and death domains; n=6;
           Xenopus|Rep: Novel protein containing TNFR/NGFR
           cysteine-rich region and death domains - Xenopus
           tropicalis (Western clawed frog) (Silurana tropicalis)
          Length = 333

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 139 ATKN*LTKCQYVAECPGSHPCXSCLKCKQ 53
           AT+N   +C+    CP  HPC  CL C +
Sbjct: 108 ATQNAECRCKKGTYCPIDHPCEVCLTCTE 136


>UniRef50_Q60RR4 Cluster: Putative uncharacterized protein CBG21217;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG21217 - Caenorhabditis
           briggsae
          Length = 284

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 KIQNQNWTSRNDILHNKAPGVTGN-VNTKKQDLYVIIASW 308
           +I N++W +   ++H+K  G+  N  N   QD+ V   SW
Sbjct: 204 RIHNRSWITLGYVMHSKMSGLAFNGTNLTNQDINVFYKSW 243


>UniRef50_A3GIC4 Cluster: Lactose Permease; n=1; Pichia
           stipitis|Rep: Lactose Permease - Pichia stipitis (Yeast)
          Length = 555

 Score = 31.5 bits (68), Expect = 6.6
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = -3

Query: 229 ISFRDVQFWF*IFQMF*DIFTVILVDLNSMATKN 128
           ++ +++++W+ +F +F D F VI++ L  + TKN
Sbjct: 475 VAMQNIKYWYYVFFVFWDTFEVIIIYLYFVETKN 508


>UniRef50_A4SBE0 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 1462

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 255 TGNVNTKKQDLYVIIA-SWKFLEVKLKW 335
           TG+V   KQ    +IA +WKFLE +L W
Sbjct: 612 TGSVRELKQTANAVIAVAWKFLEFRLSW 639


>UniRef50_A0DPT8 Cluster: Chromosome undetermined scaffold_59, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_59,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 141

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 209 ILVLNLPNVLRHFYRNFSRFKFYGNKELTDKMSIRRGMSRLTPVPFMSQV*TGK--KNYN 36
           I +LN+ N    ++RN  + K    KELT K+++R+ +    P P   ++ T K  KN N
Sbjct: 4   IYLLNISNTHYVYFRNGEKGKQKYKKELTKKINVRKNILSDPPSPQRCKMITKKTLKNKN 63

Query: 35  *ITLIKKN 12
            +   K+N
Sbjct: 64  -LKFTKQN 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,163,020
Number of Sequences: 1657284
Number of extensions: 5966912
Number of successful extensions: 12015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12012
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)