Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0750
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114... 29 1.1
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 29 1.1
04_03_0313 + 14233049-14234362,14234558-14235523 29 1.1
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 27 4.3
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 27 4.3
11_03_0108 + 10101717-10101724,10101927-10101962,10102242-101023... 27 5.6
08_01_0629 + 5464282-5464304,5464367-5465528 27 5.6
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 27 7.5
09_04_0194 + 15504780-15506114 27 7.5
05_04_0300 - 19969066-19969535,19971216-19972686 26 9.9
>04_03_0623 -
18109311-18109853,18109900-18110495,18111292-18111493,
18111616-18111814,18112091-18112191
Length = 546
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 378 ISXRLVTYLIDSRTTTST*PLKTSMKLLLRRGLVFWY*HSL*HPVLY 238
+ + + YLI S+ S L+ +K+ F Y HSL HP+L+
Sbjct: 318 VPNKTLHYLIHSQNDPSIRTLEIRLKVAAESAEAFSYLHSLDHPILH 364
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 378 ISXRLVTYLIDSRTTTST*PLKTSMKLLLRRGLVFWY*HSL*HPVLY 238
+ + + YLI S+ S L+ +K+ F Y HSL HP+L+
Sbjct: 441 VPNKTLHYLIHSQNDPSIRTLEIRLKVAAESAEAFSYLHSLDHPILH 487
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 144 EFKSTKITVKMS*NIWKIQNQNWTSRNDILHNKAPGVTGNVNTKKQDLYVIIASWKFLEV 323
+ KS K + + +IW I N+ W N +L + G V T+ Q++ ++ + F
Sbjct: 318 KLKSQKFLLVLD-DIWSITNREWEELNALLKDGLKGSMILVTTRLQNVANLVCTNNFEPF 376
Query: 324 KLK 332
+LK
Sbjct: 377 ELK 379
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 170 YRNFSRFKFYGNKELTDKMSIRRGMSRLTPV 78
Y NF F+ YG++ L D + I MS P+
Sbjct: 844 YVNFGVFELYGDRALADALDISLKMSLSVPL 874
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 170 YRNFSRFKFYGNKELTDKMSIRRGMSRLTPV 78
Y NF F+ YG++ L D + I MS P+
Sbjct: 747 YVNFGVFELYGDRALADALDISLKMSLSVPL 777
>11_03_0108 +
10101717-10101724,10101927-10101962,10102242-10102392,
10102393-10102551
Length = 117
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 114 HFVS*FFVAIEFKSTK-ITVKMS*NIWKIQNQNWTSRNDILHNKAPGVT 257
H + + I+ K K I V S W + W SRND++ NK+P ++
Sbjct: 18 HIFDGWLLGIDKKKIKLILVGASAICWAL----WLSRNDLVFNKSPSIS 62
>08_01_0629 + 5464282-5464304,5464367-5465528
Length = 394
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 204 QNWTSRNDILHNK-APGVTGNVN 269
+NW SRN+I+H K AP + + N
Sbjct: 163 RNWFSRNEIMHGKPAPTIEASKN 185
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 215 RPILVLNLPNVLRHFYRNFSRFKFYGNKEL 126
RP L+ NL NV+R F ++ F+ K+L
Sbjct: 182 RPFLIKNLENVMRKFLQSLEFFEENERKKL 211
>09_04_0194 + 15504780-15506114
Length = 444
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 115 CQYVAECPGSHPCXSCL 65
C Y+A C GS P +CL
Sbjct: 114 CSYIASCLGSPPSPACL 130
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 129 IN*QNVNTSRNVPAHTRAXHVSSVNRQ 49
+N +VN + +PAH+ A H NR+
Sbjct: 524 VNSSSVNATEKIPAHSAAYHGKLKNRR 550
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,117,637
Number of Sequences: 37544
Number of extensions: 149890
Number of successful extensions: 258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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