Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0750
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  27   7.7  

>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 135 VAIEFKSTKITVKMS*NIWKIQNQNWTSRNDILHNKAPGVTGNVNTKKQD-LYVII-ASW 308
           V +EF   ++T+     IWK+Q        D +HN         NT + D L+ +I  SW
Sbjct: 521 VVVEFLGNRLTLDELTTIWKMQLGKHPIEVDNIHNILATAAVRFNTNQLDHLFTLIQQSW 580


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 200  LNLPNVLRHFYRNFSRFKFYGNKELTDKMSIRRGMSRLTPVPFMS 66
            L L + L  F +  S  + Y   E     ++R GM R+ PVPF+S
Sbjct: 3399 LALNHRLHEFDQQVSDNRLY---EFDQCSAVREGMGRVVPVPFLS 3440


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 182 LRHFYRNFSRFKFYGNKELTDKMSIRRGMSRLTP 81
           +R+F ++F R +FY N  + DK+S+   + + TP
Sbjct: 357 MRNFAQHFLRMEFYSN-SMPDKVSLDALLFQYTP 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,184
Number of Sequences: 59808
Number of extensions: 190302
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)