Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0750
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   2.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   4.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   4.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +2

Query: 269 YQKTRPLRNNSFMEVFRGQVEVVVLESIR*VTSRCDILVGRAI 397
           Y+K +P  + S +++   + E V ++ +     +CD L+  A+
Sbjct: 434 YKKLQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAV 476


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +2

Query: 269 YQKTRPLRNNSFMEVFRGQVEVVVLESIR*VTSRCDILVGRAI 397
           Y+K +P  + S +++   + E V ++ +     +CD L+  A+
Sbjct: 434 YKKLQPQYSQSELQMPGVKFESVNIDKLYTYFDKCDTLINNAV 476


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -2

Query: 197 NLPNVLRHFYRNF-SRFKFYGNKE 129
           N+P  L  FY NF S  K   N E
Sbjct: 522 NVPKKLNMFYNNFNSDIKSISNNE 545


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -2

Query: 197 NLPNVLRHFYRNF-SRFKFYGNKE 129
           N+P  L  FY NF S  K   N E
Sbjct: 522 NVPKKLNMFYNNFNSDIKSISNNE 545


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 KSTKITVKMS*NIWKIQNQNWTSRNDILH 236
           KS  +++KM   IW+     +  ++  +H
Sbjct: 105 KSLSLSIKMLERIWRPDTYFYNGKHSYVH 133


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 209 ILVLNLPNVLRHFYRNF 159
           +LVL LPN L  F++ +
Sbjct: 89  LLVLGLPNELSLFWQQY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,720
Number of Sequences: 438
Number of extensions: 1979
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)