Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0750
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06120.1 68418.m00680 Ran-binding protein, putative similar t...    27   6.3  
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    26   8.3  

>At5g06120.1 68418.m00680 Ran-binding protein, putative similar to
           SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens};
           contains Pfam profile PF03810: Importin-beta N-terminal
           domain
          Length = 1066

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 194 LPNVLRHFYRNFSRFKFYGNKELTDKMSIRRGMSRLTPV 78
           L   L   Y NF  F+ YG++ L D + I   M+   P+
Sbjct: 830 LSRALSGNYCNFGVFELYGDRALADALDIALKMTLAIPL 868


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 199 KTKIGRHGTISFIIKHRVLQGMLI 270
           K K+  HGT+  +++H VL   L+
Sbjct: 228 KAKLNNHGTLGALLQHEVLPRSLV 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,650,134
Number of Sequences: 28952
Number of extensions: 132651
Number of successful extensions: 212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)