Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0745
         (415 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF120977-1|ABO93155.1| 1349|Drosophila melanogaster misfire prot...    27   7.4  

>EF120977-1|ABO93155.1| 1349|Drosophila melanogaster misfire
           protein.
          Length = 1349

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 185 NSRKNSKCV*RMSKVLPLHTLAQKXTSNNDXSR 87
           N+  +  CV R S+++P HTL+ K     D +R
Sbjct: 7   NAWLSLNCVLRRSRLMPTHTLSSKTVPGLDETR 39


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,432
Number of Sequences: 53049
Number of extensions: 190301
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)