Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0738
         (414 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.7  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   6.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.3  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    20   8.3  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    20   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 283 GAKVKSVCTFEGXTLKQVQKARDG 354
           G      C FEG  +K +   +DG
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDG 365


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 238 DEVQAREEFEEDRADGAKVKSVCTFEGXTLKQ 333
           DE+   +   ++  D    K  CT EG  LK+
Sbjct: 30  DEILKNDRLTKNYLDCILEKGKCTPEGEELKK 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -1

Query: 144 RVIRPTPMVFMNSSKFSEEVI 82
           +VIR TP+V + S+ +  +++
Sbjct: 381 KVIRDTPIVAIISNMYKNQIL 401


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 238 DEVQAREEFEEDRADGAKVKSVCTFEGXTLKQ 333
           DE+   +    +  D    K  CT EG  LK+
Sbjct: 31  DEILKNDRLTRNYLDCVLGKGKCTPEGEELKK 62


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 238 DEVQAREEFEEDRADGAKVKSVCTFEGXTLKQ 333
           DE+   +    +  D    K  CT EG  LK+
Sbjct: 31  DEILKNDRLTRNYLDCVLGKGKCTPEGEELKK 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,204
Number of Sequences: 336
Number of extensions: 1103
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)