Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0738
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      27   6.1  

>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 256 EEFEEDRADGAKVKSVCTFEGXTLK 330
           +E E+D  DG+K  S CTFEG T++
Sbjct: 26  DEHEKDLRDGSKRISGCTFEGITMQ 50


>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 175 HGRGDRVGGFAGDQTHADG 119
           HG GD  GG  GD  H DG
Sbjct: 390 HGGGDHGGGDYGDGDHGDG 408



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 175 HGRGDRVGGFAGDQTHADGLHELIKVLGGSH 83
           HG GD  GG  GD  H  G H      GG H
Sbjct: 365 HGGGDHGGGDHGDGDHGGGDHGGGDHGGGDH 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,606,487
Number of Sequences: 59808
Number of extensions: 155214
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)