Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0738
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    80   1e-17
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    38   6e-05
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    37   8e-05
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.6  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 79.8 bits (188), Expect = 1e-17
 Identities = 34/64 (53%), Positives = 49/64 (76%)
 Frame = +2

Query: 59  EFVGXKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLXXSSTFKTTE 238
           +F+G +YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L  +S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 239 MKFK 250
           +KFK
Sbjct: 63  IKFK 66



 Score = 51.6 bits (118), Expect = 3e-09
 Identities = 27/51 (52%), Positives = 31/51 (60%)
 Frame = +1

Query: 256 EEFEEDRADGAKVKSVCTFEGXTLKQVQKARDGLEVTYXRXXXPDEMKAVM 408
           EEFEE+  DG KVKSVCT +G  L QVQK     + T  R     EMKA+M
Sbjct: 69  EEFEEETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIM 117


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 37.5 bits (83), Expect = 6e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +2

Query: 56  MEFVGXKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLXXSSTFKTT 235
           ++F G K++  S  NF+EF K +G   +         P+ EL K+GDE+    SS   T 
Sbjct: 2   VQFEG-KFQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 236 EMKFK 250
              FK
Sbjct: 60  TKTFK 64


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 37.1 bits (82), Expect = 8e-05
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +2

Query: 59  EFVGXKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLXXSSTFKTTE 238
           +F G K++  S  NF+EF K +G   +         P+ EL K+GDE+    SS   T  
Sbjct: 1   QFEG-KFQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 239 MKFK 250
             FK
Sbjct: 59  KTFK 62


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 113 MKTIGVGLITRKAANAVTPTVELRKDGDEYN 205
           MKTI  G    +    V    E  K G EY+
Sbjct: 513 MKTIKKGSFVTQYVGEVITNEEAEKRGKEYD 543


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 112 HEDHRRGSDHPQSRQRG 162
           HE++     HP  R RG
Sbjct: 381 HEENESVDKHPNRRARG 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,148
Number of Sequences: 438
Number of extensions: 1361
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)