Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0738
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   3.8  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   3.8  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   3.8  
At3g08950.1 68416.m01045 electron transport SCO1/SenC family pro...    27   5.0  
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    26   8.7  
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    26   8.7  

>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 80  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 193
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 80  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 187
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 80  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 187
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


>At3g08950.1 68416.m01045 electron transport SCO1/SenC family
           protein similar to SP|P23833 SCO1 protein, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02630: SCO1/SenC
          Length = 334

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 130 GSDHPQSRQRGHPDRGAPXGW*RIQFXXLF 219
           GSDH   R  G   RG P  W  + F  LF
Sbjct: 107 GSDHKNERASGKDVRGGPVSW--MSFFLLF 134


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 118 DHRRGSDHPQSRQRGHPDRG 177
           D RR S  P  R+RG PD G
Sbjct: 187 DRRRRSPSPYRRERGSPDYG 206


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 118 DHRRGSDHPQSRQRGHPDRG 177
           D RR S  P  R+RG PD G
Sbjct: 187 DRRRRSPSPYRRERGSPDYG 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,705,096
Number of Sequences: 28952
Number of extensions: 107687
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)