Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0735
         (422 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CD09F Cluster: hypothetical protein TTHERM_0019...    35   0.79 
UniRef50_A5DNB2 Cluster: Putative uncharacterized protein; n=1; ...    34   1.0  
UniRef50_Q4JA83 Cluster: Conserved protein; n=2; Sulfolobus|Rep:...    31   7.4  
UniRef50_A4AUT1 Cluster: Probable transcriptional regulatory pro...    31   9.7  

>UniRef50_UPI00006CD09F Cluster: hypothetical protein TTHERM_00191870;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00191870 - Tetrahymena thermophila SB210
          Length = 986

 Score = 34.7 bits (76), Expect = 0.79
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -1

Query: 401  TFWHEGRKFSDKTCNIEALDFSLNSEDYIVLGNIH*NRKMLDKRIKMKQ 255
            +F +  RKF  K  ++  LD   N++++ VL  I  N  MLD+ +K KQ
Sbjct: 934  SFNNAARKFMKKNSSLNNLDSVQNNDNFQVLKQIELNLTMLDEELKEKQ 982


>UniRef50_A5DNB2 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 359

 Score = 34.3 bits (75), Expect = 1.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 419 LFTHQKTFWHEGRKFSDKTCNIEALDFSLNSEDYIVLGN 303
           LFT Q+TFW +  +     C+ E L FSL    Y ++G+
Sbjct: 40  LFTPQRTFWSQPWRLITAFCHFEGLSFSLLVRVYYMMGS 78


>UniRef50_Q4JA83 Cluster: Conserved protein; n=2; Sulfolobus|Rep:
           Conserved protein - Sulfolobus acidocaldarius
          Length = 169

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
 Frame = -1

Query: 380 KFSDKTCNIEALDFSL-----NSEDYIVLGNIH*NRKMLDKRIKMKQ*SE--SESY*YNI 222
           K +    NIE L +S+     N +DYI+ G  H + K  DK +   +  E  S S   + 
Sbjct: 73  KVNSFNVNIEELTYSIYNSIENGKDYII-G--HDSLKFEDKVLATGKFQEIISLSQVIDS 129

Query: 221 INRDAQYLTISD*XNYNLLSVWQHFSHKTKRDL 123
           I +D   +++ D   Y   S+W+HF+   +R L
Sbjct: 130 IKKDKNIISLCDEIRYLSESLWEHFNKNIRRVL 162


>UniRef50_A4AUT1 Cluster: Probable transcriptional regulatory
           protein; n=1; Flavobacteriales bacterium HTCC2170|Rep:
           Probable transcriptional regulatory protein -
           Flavobacteriales bacterium HTCC2170
          Length = 287

 Score = 31.1 bits (67), Expect = 9.7
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 154 SIFH-IKQSATLKSKI--IKFNSKTLTILINTN*FEIFFSFNVLTQ 26
           SIFH +KQ   +  ++  IKF      I++N+N  ++ F FN +TQ
Sbjct: 137 SIFHYLKQGEEIPKELVEIKFKELLFNIVLNSNNNQLLFFFNSITQ 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,184,365
Number of Sequences: 1657284
Number of extensions: 3578768
Number of successful extensions: 6284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6284
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)