Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0735
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 188 H*SSNIVHLC*LYYTNKIPTHSIASSLFSYQAFFYSNV 301
           H SS+I+H C ++ T+K  T + A   FSY AF   NV
Sbjct: 110 HNSSDILHQCHVFRTSKAETAAKALYSFSY-AFSNKNV 146


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 188 H*SSNIVHLC*LYYTNKIPTHSIASSLFSYQAFFYSNV 301
           H SS+I+H C ++ T+K  T + A   FSY AF   NV
Sbjct: 110 HNSSDILHQCHVFRTSKAETAAKALYSFSY-AFSNKNV 146


>Z68752-3|CAE54905.1|  888|Caenorhabditis elegans Hypothetical
           protein T12G3.2c protein.
          Length = 888

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 158 WQHFSHKTKRDLKI*NYKIQ 99
           W HF H  K+  K+  YK+Q
Sbjct: 521 WDHFKHLFKQHFKLLKYKLQ 540


>Z68752-2|CAE54904.1|  912|Caenorhabditis elegans Hypothetical
           protein T12G3.2b protein.
          Length = 912

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 158 WQHFSHKTKRDLKI*NYKIQ 99
           W HF H  K+  K+  YK+Q
Sbjct: 521 WDHFKHLFKQHFKLLKYKLQ 540


>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical
           protein T12G3.2a protein.
          Length = 928

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 158 WQHFSHKTKRDLKI*NYKIQ 99
           W HF H  K+  K+  YK+Q
Sbjct: 521 WDHFKHLFKQHFKLLKYKLQ 540


>U97189-7|AAK68257.3|  782|Caenorhabditis elegans Hypothetical
           protein C48B6.8 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 352 SILQVLSENFLPSCQNV 402
           +ILQ+ S+NFLPS  N+
Sbjct: 64  AILQMASDNFLPSMNNI 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,637,765
Number of Sequences: 27780
Number of extensions: 96885
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)