Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0735
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    23   1.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    23   1.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    23   1.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    23   1.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    23   1.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   4.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   10.0 

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 98   IEFYNFRF*GRALFYVKNAATLITNY 175
            +E + F F  R L +VK    L+T+Y
Sbjct: 947  LEPFGFGFEQRGLVFVKGKGQLLTHY 972


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 146 KNAATLITNYNXFNH*SSNIVHLC-*LYYTNKIP 244
           K  ++L  NYN  N+ ++N   LC  + Y  +IP
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 146 KNAATLITNYNXFNH*SSNIVHLC-*LYYTNKIP 244
           K  ++L  NYN  N+ ++N   LC  + Y  +IP
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 146 KNAATLITNYNXFNH*SSNIVHLC-*LYYTNKIP 244
           K  ++L  NYN  N+ ++N   LC  + Y  +IP
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 146 KNAATLITNYNXFNH*SSNIVHLC-*LYYTNKIP 244
           K  ++L  NYN  N+ ++N   LC  + Y  +IP
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 146 KNAATLITNYNXFNH*SSNIVHLC-*LYYTNKIP 244
           K  ++L  NYN  N+ ++N   LC  + Y  +IP
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLCYNINYIEQIP 113


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 146 KNAATLITNYNXFNH*SSNIVHLC 217
           K  ++L  NYN  N+ ++N   LC
Sbjct: 80  KIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 170 NYNXFNH*SSNIVHLC*LYY 229
           NYN +N+ ++N  +   LYY
Sbjct: 100 NYNNYNYNNNNYNNYKKLYY 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,988
Number of Sequences: 438
Number of extensions: 1320
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)