Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0734
         (425 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   3.8  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   6.6  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   6.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 43  YTIVSYISHXXXXXXXXXKNYVILLYICAAENILIXXVFRI*RYY-CMSIIIHTCMMFYN 219
           Y  + +  H           Y+ LL+ CA     +  +F +  YY   ++II  C+ ++ 
Sbjct: 243 YAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFC 302

Query: 220 KNILI 234
           +  +I
Sbjct: 303 RAFII 307


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 168 KVLLYVDYNP 197
           +VLL++DYNP
Sbjct: 150 EVLLFLDYNP 159


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 91  KNMW*RISVKY 59
           KNMW R  +KY
Sbjct: 151 KNMWTRFQLKY 161


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 91  KNMW*RISVKY 59
           KNMW R  +KY
Sbjct: 151 KNMWTRFQLKY 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,355
Number of Sequences: 336
Number of extensions: 1446
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)