Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   2.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.8  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 290 SKHFPYWQKR 319
           SKH+ YWQ +
Sbjct: 18  SKHYSYWQSK 27


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 347 PHEFSIHPISFFASMENVC 291
           P EF+  P + F +  N+C
Sbjct: 499 PTEFACRPGTVFHTQSNIC 517


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 231 DYKDPEITHQSCS 269
           D + P I H SCS
Sbjct: 8   DRESPNIDHNSCS 20


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,243
Number of Sequences: 336
Number of extensions: 2269
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)