Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    31   0.076
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.6  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   2.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   5.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   5.0  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   6.6  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    24   8.7  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 31.1 bits (67), Expect = 0.076
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 206 HNILS--QIPRLQRS*NNSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNI 376
           HNI+   Q  ++Q   NN S     +RIKS+K  P W + I+   K  E TR   + ++
Sbjct: 577 HNIIKKCQESQIQTGKNNCSFQLVKKRIKSTKKAPSW-RSIIKAFKKRENTRCNFLSSL 634


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 LDELKIHEETRVTVVKNIPEINAKLWKI 406
           + E+  H+ +R+ +V+NI  I    WK+
Sbjct: 278 IPEISFHDTSRLDLVRNIASIPKSRWKL 305


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +2

Query: 218 SQIPRLQRS*NNSSKLFRVERIKSSKHFPYWQKRILDE----LKIHEETRVTVVKNIPEI 385
           +QI RL +S N +++   +E   +  + P   KR L        IH+   ++   N+P I
Sbjct: 118 NQIKRLPQSDNTTTERI-IENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRI 176

Query: 386 NAKLWKIKHLIK 421
            + L+ IK  ++
Sbjct: 177 PSDLYDIKQFLE 188


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 258 DELFQDLCNLGIWDSMLCP-QGNEYLLDVYNLLIE 157
           DEL  +LC+L +W   L     ++ LLD Y+L ++
Sbjct: 360 DELSSNLCDLYLWSIDLEQISPSDCLLDNYSLFVD 394


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 314 KRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPI 433
           + + ++LK+  E  +++ K + E+  +L  ++   K +PI
Sbjct: 660 EELREQLKVEHEENISMQKQLSELKGELNTLRSARKASPI 699


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 162 SKGYKHPGGIRYPGGITYYPRF-PDYKDPEITHQSCSE*SELNQANIFHTGKK 317
           SKG+   GGIR P  I Y P   PD    E         + L  A + H G K
Sbjct: 381 SKGFITEGGIRCPAIIRYPPLIKPDIISDEFVTVMDILPTILELAEVPHPGHK 433


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 362 Q*LWSPHEFSIHPISFFASMENVC 291
           Q L+S  EF+IH ++ F +  +VC
Sbjct: 316 QSLFSIKEFAIHELNLFNTYNSVC 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,312
Number of Sequences: 5004
Number of extensions: 36776
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)