Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0327 + 20984336-20985478                                         29   1.2  
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514...    28   3.7  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    28   3.7  
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131...    27   4.9  
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    27   6.5  
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205...    27   8.6  

>01_05_0327 + 20984336-20985478
          Length = 380

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 126 LRNFNPLVSIIRSKGYKHPGGIRYPGGITYYPRFPDYKDPEITHQS 263
           L +  P+ S+ RS  Y+H    +   G+TYY + P++++ +  HQS
Sbjct: 287 LPSSEPVYSLSRSYPYEHK--FQTTRGVTYYVKLPNFEE-QYPHQS 329


>10_02_0089 -
           5138048-5138561,5138864-5139105,5139712-5140079,
           5140862-5140943
          Length = 401

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 PWGHNILSQIPRLQRS*NNSSKLFRVERIKSSKHFPYWQK 316
           PWGH + ++ PR+ RS   + K         SK++PYW +
Sbjct: 100 PWGHPLTTKSPRMMRS---AIKFI-------SKYWPYWNR 129


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 308 WQKRILDELKIHEETRVTVVKN 373
           W+K++ DE+K  E+ R+ + KN
Sbjct: 426 WEKKLYDEVKAEEKMRLLLAKN 447


>01_05_0777 +
           25110356-25110662,25112569-25112789,25112880-25113127,
           25113274-25113664,25113751-25114155,25115260-25115366,
           25115833-25116170,25116206-25116486,25116645-25116889,
           25116998-25117382,25117459-25117884
          Length = 1117

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 120 KLLRNFNPLVSIIRSKGYK--HPGGIRYPGGI 209
           ++LR + PL ++ R K YK    GG+RYP G+
Sbjct: 396 EVLRLYTPLTALQR-KTYKPMELGGVRYPAGV 426


>08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,
            5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 82   FVTNNLSPIK*TENYYEILIHWFLSFDQK-VINIQEVFV 195
            F  NNL  +K T    ++++H    F Q+  I++Q++FV
Sbjct: 971  FACNNLKKVKITCRKDDVMVHMLAKFLQRNGISLQKIFV 1009


>01_07_0033 -
           40619145-40619658,40619761-40620002,40620178-40620566,
           40621586-40621688
          Length = 415

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 197 PWGHNILSQIPRLQRS*NNSSKLFRVERIKSSKHFPYWQK 316
           PWGH +  + PR+ RS         ++ I  S H+PYW +
Sbjct: 114 PWGHPLPFKSPRIMRS--------AIQFI--SSHWPYWNR 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,070
Number of Sequences: 37544
Number of extensions: 202867
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)