Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.7  
SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 249 ITHQSCSE*SELNQANIFHTGKKGYWMN*KFMRRPE 356
           + HQ+ SE  +L+       G  GY +  KF+R PE
Sbjct: 622 LNHQTNSEEMQLHYGKFRQNGNTGYVLKPKFLRDPE 657


>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = -3

Query: 260 LMSYFRIFVIWESGIVCYAPR----VTNTSWMFIT 168
           ++ +F++ + W S + C +      VT  SW+F+T
Sbjct: 35  IVEFFQLLIAWVSAVACCSANFFLFVTIFSWIFVT 69


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 269  RVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAK 394
            +++ I ++ HFPY+ ++ L  ++I E T V V+  + E+ AK
Sbjct: 1956 KIDVINANDHFPYFDQQ-LYSVQIPESTAVGVL--VQEVTAK 1994


>SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 320 ILDELKIHEETRVTVVKNIP-EINAKLWKI 406
           + DE  I  ETR+ ++K +P EI A L K+
Sbjct: 35  VTDETTITPETRLKIIKKMPEEIKAPLTKL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,580,264
Number of Sequences: 59808
Number of extensions: 245455
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)