Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0731
         (433 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal...    60   3e-09
BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal...    60   3e-09
AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens ...    60   3e-09
AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.              60   3e-09
AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal...    36   0.078

>BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +2

Query: 251 NSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 430
           N  KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 62  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 121

Query: 431 I 433
           +
Sbjct: 122 L 122


>BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +2

Query: 251 NSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 430
           N  KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 62  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 121

Query: 431 I 433
           +
Sbjct: 122 L 122


>AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44438 fis, clone UTERU2019940, moderately
           similar to Homo sapiens mitochondrial ribosomal protein
           L30 (MRPL30). ).
          Length = 191

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +2

Query: 251 NSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 430
           N  KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 92  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 151

Query: 431 I 433
           +
Sbjct: 152 L 152


>AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.
          Length = 161

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +2

Query: 251 NSSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 430
           N  KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 62  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 121

Query: 431 I 433
           +
Sbjct: 122 L 122


>AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 68

 Score = 35.5 bits (78), Expect = 0.078
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 362 VVKNIPEINAKLWKIKHLIKITPI 433
           V KNIP +NAKL  +KHLI+I P+
Sbjct: 6   VHKNIPSVNAKLKVVKHLIRIKPL 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,941,259
Number of Sequences: 237096
Number of extensions: 1254229
Number of successful extensions: 6278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6278
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)